Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tfe3

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver tissue
diet intervention
Normal chow
genotype
LiFKO
aav8 injection
Cre (1.5e11 GC)
feeding state when sacrificed
Ad lib
chip antibody
TFE3 (Sigma HPA023881)
chip or input sample
ChIP

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
33319558
Reads aligned (%)
98.9
Duplicates removed (%)
9.7
Number of peaks
19283 (qval < 1E-05)

mm9

Number of total reads
33319558
Reads aligned (%)
98.8
Duplicates removed (%)
9.8
Number of peaks
19298 (qval < 1E-05)

Base call quality data from DBCLS SRA